STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS38088.1Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (370 aa)    
Predicted Functional Partners:
ACS38089.1
Cytochrome B561; Function of strongly homologous gene; carrier.
 
     0.938
ACS38623.1
Putative glycolate oxidase (glcD-like), FAD-linked subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.911
ACS42846.1
Putative glycolate oxidase subunit GlcE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.911
glcF
Glycolate oxidase iron-sulfur subunit; Function of strongly homologous gene; carrier.
     
  0.900
ACS38087.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.782
ACS38086.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.780
ACS41848.1
Putative peroxidase, putative peroxiredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.715
hfq
Protein hfq, RNA-binding host factor; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.630
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.627
ACS40230.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
 0.594
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.