STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppsRTranscriptional regulator PpsR-CrtJ; Function of strongly homologous gene; regulator. (486 aa)    
Predicted Functional Partners:
ACS42877.1
Conserved hypothetical protein, putative photosynthesis gene regulator (bchF-crtJ); Homologs of previously reported genes of unknown function.
 
     0.931
bchP
Geranylgeranyl reductase; Function of strongly homologous gene; enzyme.
 
     0.894
bchG
Geranylgeranyl bacteriochlorophyll synthase; Function of strongly homologous gene; enzyme.
 
   
 0.893
pucC
Light harvesting pigment Major Facilitator Family (MFS) transporter, (Bch2-like); Function of strongly homologous gene; transporter.
 
     0.888
bchF
2-vinyl bacteriochlorophyllide hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.874
puhA
Photosynthetic reaction center subunit H; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
   
 0.864
bchM
Mg-protoporphyrin IX methyl transferase; Function of strongly homologous gene; enzyme.
 
     0.863
ACS42868.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.860
bchB
Protochlorophyllide reductase BchB subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
     0.858
bchN
Protochlorophyllide reductase subunit BchN; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
     0.858
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.