Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ML0029 | ML0030 | gene:17573841 | gene:17573842 | Possible membrane protein; Contains a region similar to part of several bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SC4B5.06, putative transmembrane protein, TR:Q9ZBW2 (EMBL:AL034443) (345 aa); Fasta score E(): 2.4e-14, 54.1% identity in 109 aa overlap. The coding frame predicted by GC frameplot changes to either side of this region of similarity, suggesting that an ancestral CDS was disrupted. Given this, ML0029 may not be functional. Contains hydrophobic, possible membrane-spanning regions. | Putative membrane protein; Similar to M. tuberculosis Rv0039c, hypothetical protein, TR:P71696 (EMBL:AL123456) (115 aa); Fasta score E(): 2.2e-25, 63.2% identity in 114 aa overlap. Previously sequenced as TR:O32871 (EMBL:Z70722) (113 aa); Fasta score E(): 0, 100.0% identity in 113 aa overlap. Contains hydrophobic, possible membrane-spanning regions. | 0.724 |
| ML0029 | arsC | gene:17573841 | gene:17574064 | Possible membrane protein; Contains a region similar to part of several bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SC4B5.06, putative transmembrane protein, TR:Q9ZBW2 (EMBL:AL034443) (345 aa); Fasta score E(): 2.4e-14, 54.1% identity in 109 aa overlap. The coding frame predicted by GC frameplot changes to either side of this region of similarity, suggesting that an ancestral CDS was disrupted. Given this, ML0029 may not be functional. Contains hydrophobic, possible membrane-spanning regions. | Putative arsenate reductase; Similar to many e.g. Escherichia coli arsC, arsenate reductase, SW:ARC1_ECOLI (P08692) (141 aa); Fasta score E(): 1.7e-07, 38.8% identity in 103 aa overlap. Similar to proteins which expand the substrate specificity of arsAB pump. | 0.473 |
| ML0030 | ML0029 | gene:17573842 | gene:17573841 | Putative membrane protein; Similar to M. tuberculosis Rv0039c, hypothetical protein, TR:P71696 (EMBL:AL123456) (115 aa); Fasta score E(): 2.2e-25, 63.2% identity in 114 aa overlap. Previously sequenced as TR:O32871 (EMBL:Z70722) (113 aa); Fasta score E(): 0, 100.0% identity in 113 aa overlap. Contains hydrophobic, possible membrane-spanning regions. | Possible membrane protein; Contains a region similar to part of several bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SC4B5.06, putative transmembrane protein, TR:Q9ZBW2 (EMBL:AL034443) (345 aa); Fasta score E(): 2.4e-14, 54.1% identity in 109 aa overlap. The coding frame predicted by GC frameplot changes to either side of this region of similarity, suggesting that an ancestral CDS was disrupted. Given this, ML0029 may not be functional. Contains hydrophobic, possible membrane-spanning regions. | 0.724 |
| arsC | ML0029 | gene:17574064 | gene:17573841 | Putative arsenate reductase; Similar to many e.g. Escherichia coli arsC, arsenate reductase, SW:ARC1_ECOLI (P08692) (141 aa); Fasta score E(): 1.7e-07, 38.8% identity in 103 aa overlap. Similar to proteins which expand the substrate specificity of arsAB pump. | Possible membrane protein; Contains a region similar to part of several bacterial hypothetical membrane proteins e.g. Streptomyces coelicolor SC4B5.06, putative transmembrane protein, TR:Q9ZBW2 (EMBL:AL034443) (345 aa); Fasta score E(): 2.4e-14, 54.1% identity in 109 aa overlap. The coding frame predicted by GC frameplot changes to either side of this region of similarity, suggesting that an ancestral CDS was disrupted. Given this, ML0029 may not be functional. Contains hydrophobic, possible membrane-spanning regions. | 0.473 |