Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
fbpC | mtb12 | gene:17573910 | gene:17574441 | Antigen 85C, mycolyltransferase; May have a role in host tissue attachment, whereby ligands may include the serum protein fibronectin and small sugars. | Putative secreted protein; Similar to M. tuberculosis mtb12, Rv2376c, low molecular weight antigen, SW:MB12_MYCTU (O05822) (168 aa); Fasta score E(): 0, 65.5% identity in 165 aa overlap. Previously sequenced as SW:MB12_MYCLE (Q49771) (165 aa); Fasta score E(): 0, 100.0% identity in 165 aa overlap. M. tuberculosis mtb12 is secreted, therefore this protein may also be secreted. | 0.653 |
mtb12 | fbpC | gene:17574441 | gene:17573910 | Putative secreted protein; Similar to M. tuberculosis mtb12, Rv2376c, low molecular weight antigen, SW:MB12_MYCTU (O05822) (168 aa); Fasta score E(): 0, 65.5% identity in 165 aa overlap. Previously sequenced as SW:MB12_MYCLE (Q49771) (165 aa); Fasta score E(): 0, 100.0% identity in 165 aa overlap. M. tuberculosis mtb12 is secreted, therefore this protein may also be secreted. | Antigen 85C, mycolyltransferase; May have a role in host tissue attachment, whereby ligands may include the serum protein fibronectin and small sugars. | 0.653 |