Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MSC_0665Hypothetical protein. (407 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase (lipoamide), beta chain.
  
 0.835
pdhD
Dihydrolipoamide dehydrogenase.
  
 0.781
pdhD-2
Dihydrolipoamide dehydrogenase.
  
 0.781
pdhA
Pyruvate dehydrogenase (lipoamide), alpha chain; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 0.690
prs
Ribose-phosphate pyrophosphokinase.
  
 0.680
lplA
Lipoate protein ligase.
  
 0.611
lplA-2
Lipoate-protein ligase A.
  
 0.611
gcdH
Glycine cleavage system H protein.
  
 0.578
MSC_0692
Hypothetical protein.
  
 0.566
MSC_0308
Protein phosphatase; Truncated.
   
  0.536
Your Current Organism:
Mycoplasma mycoides
NCBI taxonomy Id: 272632
Other names: M. mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC strain PG1
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