Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phnC-3Alkylphosphonate ABC transporter, ATP-binding component. (249 aa)    
Predicted Functional Partners:
abc-13
ABC TRANSPORTER, substrate-binding component; Part of a high-affinity transport system.
 
     0.859
phnB
Alkylphosphonate ABC transporter, permease component.
 
  
 0.832
phnE
Phosphonate ABC transporter, permease component.
 
  
 0.801
phnD?
Prolipoprotein, putative phosphonate ABC transport.
 
  
 0.755
abc-12
ABC transporter, permease component; Truncated.
 
  
 0.735
had
Hydrolase of the HAD family.
     
 0.584
pstCA
Phosphate ABC transport system, permease component.
  
  
 0.505
tnp-30
Transposase IS1634AY.
       0.500
oppD-2
Oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
     
0.475
patB-2
Aminotransferase (PLP-dependent).
     
 0.456
Your Current Organism:
Mycoplasma mycoides
NCBI taxonomy Id: 272632
Other names: M. mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC strain PG1
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