Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
abc-13ABC TRANSPORTER, substrate-binding component; Part of a high-affinity transport system. (477 aa)    
Predicted Functional Partners:
phnB
Alkylphosphonate ABC transporter, permease component.
 
  
  0.956
phnD?
Prolipoprotein, putative phosphonate ABC transport.
     
  0.900
phnD
Alkylphosphonate ABC transporter, substrate-bindin; Part of a high-affinity transport system.
  
  
 
0.900
phnC-2
Alkylphosphonate ABC transporter, ATP-binding component.
 
  
  0.879
phnC-3
Alkylphosphonate ABC transporter, ATP-binding component.
 
     0.859
abc-12
ABC transporter, permease component; Truncated.
 
     0.858
lppB
Prolipoprotein B.
  
   
 0.823
phnE
Phosphonate ABC transporter, permease component.
    
  0.814
phnC
Phosphonate ABC transporter, ATP-binding component; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
    
  0.814
MSC_0084
Conserved HYPOTHETICAL PROTEIN.
  
     0.760
Your Current Organism:
Mycoplasma mycoides
NCBI taxonomy Id: 272632
Other names: M. mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC strain PG1
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