Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MSC_1065Conserved hypothetical protein. (264 aa)    
Predicted Functional Partners:
MSC_1064
LICA protein.
       0.778
MSC_1063
Conserved hypothetical prolipoprotein.
       0.623
mod
Adenine-specific DNA-methyltransferase.
 
     0.585
MSC_1066
Conserved hypothetical transmembrane protein.
       0.577
rnpA
Ribonuclease P (protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.547
rpmH
50S RIBOSOMAL PROTEIN L34; Belongs to the bacterial ribosomal protein bL34 family.
       0.546
rbsB
Ribose/galactose ABC transporter, substrate-binding component.
 
     0.442
cps-2
Glycosyltransferase.
 
   0.441
Your Current Organism:
Mycoplasma mycoides
NCBI taxonomy Id: 272632
Other names: M. mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC str. PG1, Mycoplasma mycoides subsp. mycoides SC strain PG1
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