Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MPN_091 | R02_orf329 | MPN_091 | MPN_090 | Conserved hypothetical protein; MPN091(new), 064(Himmelreich et al., 1996); see: MPN463; To M.pneumoniae MPN_413 and MPN_463. | Adhesin P1 (group2) homolog; MPN090(new), 065(Himmelreich et al., 1996); see: MPN129. | 0.559 |
R02_orf329 | MPN_091 | MPN_090 | MPN_091 | Adhesin P1 (group2) homolog; MPN090(new), 065(Himmelreich et al., 1996); see: MPN129. | Conserved hypothetical protein; MPN091(new), 064(Himmelreich et al., 1996); see: MPN463; To M.pneumoniae MPN_413 and MPN_463. | 0.559 |
R02_orf329 | hsdS | MPN_090 | MPN_089 | Adhesin P1 (group2) homolog; MPN090(new), 065(Himmelreich et al., 1996); see: MPN129. | Hypothetical protein; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. Subunit S dictates DNA sequences specificity (By similarity). | 0.472 |
hsdS | R02_orf329 | MPN_089 | MPN_090 | Hypothetical protein; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. Subunit S dictates DNA sequences specificity (By similarity). | Adhesin P1 (group2) homolog; MPN090(new), 065(Himmelreich et al., 1996); see: MPN129. | 0.472 |