VXpSPT7_orf320 protein (Mycoplasma pneumoniae M129)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VXpSPT7_orf320

Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996). (320 aa)

Predicted Functional Partners:

VXpSPT7_orf445

0.808

VXpSPT7_orf377

0.741

cbiO

0.668

atpF

0.634

A05_orf317

0.614

artP

0.555

glpF

0.509

hlyC

0.460

VXpSPT7_orf112

0.426

infB

0.419

Your Current Organism:

Mycoplasma pneumoniae M129

NCBI taxonomy Id: 272634
Other names: M. pneumoniae M129, Mycoplasma pneumoniae ATCC 29342, Mycoplasma pneumoniae str. M129, Mycoplasma pneumoniae strain M129

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A05_orf317	VXpSPT7_orf320	MPN_431	MPN_162	Permease; MPN431(new), 409(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	0.614
A05_orf317	artP	MPN_431	MPN_432	Permease; MPN431(new), 409(Himmelreich et al., 1996).	Abc transport ATP-binding protein; MPN432(new), 408(Himmelreich et al., 1996); Belongs to the ABC transporter superfamily.	0.999
A05_orf317	cbiO	MPN_431	MPN_433	Permease; MPN431(new), 409(Himmelreich et al., 1996).	Abc transport ATP-binding protein; MPN433(new), 407(Himmelreich et al., 1996); Belongs to the ABC transporter superfamily.	0.999
VXpSPT7_orf112	VXpSPT7_orf320	MPN_163	MPN_162	Conserved hypothetical protein; MPN163(new), 669(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	0.426
VXpSPT7_orf320	A05_orf317	MPN_162	MPN_431	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Permease; MPN431(new), 409(Himmelreich et al., 1996).	0.614
VXpSPT7_orf320	VXpSPT7_orf112	MPN_162	MPN_163	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN163(new), 669(Himmelreich et al., 1996).	0.426
VXpSPT7_orf320	VXpSPT7_orf377	MPN_162	MPN_160	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	0.741
VXpSPT7_orf320	VXpSPT7_orf445	MPN_162	MPN_161	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN161(new), 671(Himmelreich et al., 1996).	0.808
VXpSPT7_orf320	artP	MPN_162	MPN_432	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Abc transport ATP-binding protein; MPN432(new), 408(Himmelreich et al., 1996); Belongs to the ABC transporter superfamily.	0.555
VXpSPT7_orf320	atpF	MPN_162	MPN_602	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	ATP synthase B chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.634
VXpSPT7_orf320	cbiO	MPN_162	MPN_433	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Abc transport ATP-binding protein; MPN433(new), 407(Himmelreich et al., 1996); Belongs to the ABC transporter superfamily.	0.668
VXpSPT7_orf320	glpF	MPN_162	MPN_043	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Glycerol uptake facilitator; Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane (By similarity).	0.509
VXpSPT7_orf320	hlyC	MPN_162	MPN_159	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	TlyC-like protein; MPN159(new), 673(Himmelreich et al., 1996).	0.460
VXpSPT7_orf320	infB	MPN_162	MPN_155	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	Protein synthesis initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	0.419
VXpSPT7_orf377	VXpSPT7_orf320	MPN_160	MPN_162	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	0.741
VXpSPT7_orf377	VXpSPT7_orf445	MPN_160	MPN_161	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN161(new), 671(Himmelreich et al., 1996).	0.898
VXpSPT7_orf377	hlyC	MPN_160	MPN_159	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	TlyC-like protein; MPN159(new), 673(Himmelreich et al., 1996).	0.784
VXpSPT7_orf377	infB	MPN_160	MPN_155	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	Protein synthesis initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	0.851
VXpSPT7_orf445	VXpSPT7_orf320	MPN_161	MPN_162	Conserved hypothetical protein; MPN161(new), 671(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN162(new), 670(Himmelreich et al., 1996).	0.808
VXpSPT7_orf445	VXpSPT7_orf377	MPN_161	MPN_160	Conserved hypothetical protein; MPN161(new), 671(Himmelreich et al., 1996).	Conserved hypothetical protein; MPN160(new), 672(Himmelreich et al., 1996).	0.898