STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYPU_1770CYSTEINYL-TRNA SYNTHETASE (CYSTEINE--TRNA LIGASE); Identified by sequence similarity; possible; similar to SWISS-PROT:P47495 (SYC_MYCGE) Blastp2 P=3e-63 C=36%; Belongs to the class-I aminoacyl-tRNA synthetase family. (596 aa)    
Predicted Functional Partners:
MYPU_1780
TRNA/RRNA METHYLTRANSFERASE; Identified by sequence similarity; possible; similar to SWISS-PROT:Q06753 (YACO_BACSU) Blastp2 P=7e-33 C=56%; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.814
MYPU_1820
TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.
     
 0.739
MYPU_0930
LEUCYL-TRNA SYNTHETASE (LEUCINE--TRNA LIGASE); Identified by sequence similarity; probable; similar to SWISS-PROT:P36430 (SYL_BACSU) Blastp2 P=0 C=70%; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.708
MYPU_2430
ARGINYL-TRNA SYNTHETASE (ARGININE--TRNA LIGASE) (ARGRS); Identified by sequence similarity; possible; similar to SWISS-PROT:P46906 (SYR_BACSU) Blastp2 P=3e-97 C=52%; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.688
MYPU_4900
METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
  
 0.687
MYPU_1760
Predicted coding region; No similarity found Pfscan: pos. 160-169 PS00142 | ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature.
       0.686
MYPU_7200
DNA POLYMERASE I (POL I); 5'-3' exonuclease acting preferentially on double-stranded DNA.
     
 0.684
MYPU_0340
SERYL-TRNA SYNTHETASE (SERINE--TRNA LIGASE); Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
 0.664
MYPU_1830
PROLYL-TRNA SYNTHETASE (PROLINE--TRNA LIGASE); Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
  
  
 0.622
MYPU_1800
RIBOSOMAL PROTEIN L33; Identified by sequence similarity; similar to SWISSPROT:P35870 (RL33_BACLI) Blast2p P=3e-4 score=39.5; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.612
Your Current Organism:
Mycoplasma pulmonis
NCBI taxonomy Id: 272635
Other names: M. pulmonis UAB CTIP, Mycoplasma pulmonis UAB CTIP, Mycoplasma pulmonis str. UAB CTIP, Mycoplasma pulmonis strain UAB CTIP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.