STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYPU_656030S RIBOSOMAL PROTEIN S20; Binds directly to 16S ribosomal RNA. (110 aa)    
Predicted Functional Partners:
MYPU_6960
50S RIBOSOMAL PROTEIN L28; Identified by sequence similarity; probable; similar to SWISS-PROT:P47665 (RL28_MYCGE) Blastp2 P=2e-11 C=70%; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.996
MYPU_1400
50S RIBOSOMAL PROTEIN L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
 
 0.995
MYPU_1540
50S RIBOSOMAL PROTEIN L34; Identified by sequence similarity; probable; similar to SWISS-PROT:P45647 (RL34_COXBU) Blastp2 P=2e-13 C=76%; Belongs to the bacterial ribosomal protein bL34 family.
  
 
 0.995
MYPU_3240
50S RIBOSOMAL PROTEIN L32; Identified by sequence similarity; putative; similar to TREMBL:O84816 (O84816) Blastp2 P=6e-06 C=37%; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.995
MYPU_3280
30S RIBOSOMAL PROTEIN S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.995
MYPU_3290
50S RIBOSOMAL PROTEIN L27; Identified by sequence similarity; probable; similar to SWISS-PROT:P05657 (RL27_BACSU) Blastp2 P=1e-24 C=73%; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.995
MYPU_3300
50S RIBOSOMAL PROTEIN L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.995
MYPU_4690
30S RIBOSOMAL PROTEIN S16; Identified by sequence similarity; probable; similar to SWISS-PROT:P21474 (RS16_BACSU) Blastp2 P=3e-20 C=68%; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.995
MYPU_4950
50S RIBOSOMAL PROTEIN L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.995
MYPU_4960
30S RIBOSOMAL PROTEIN S9; Identified by sequence similarity; probable; similar to SWISS-PROT:P21470 (RS9_BACSU) Blastp2 P=4e-34 C=66%; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.995
Your Current Organism:
Mycoplasma pulmonis
NCBI taxonomy Id: 272635
Other names: M. pulmonis UAB CTIP, Mycoplasma pulmonis UAB CTIP, Mycoplasma pulmonis str. UAB CTIP, Mycoplasma pulmonis strain UAB CTIP
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