STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYPU_2850OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN; Identified by sequence similarity; probable; similar to SWISS-PROT:P47325 (OPPD_MYCGE) Blastp2 P=2e-95 C=66% Pfscan: pos. 179-251 PS50100 | DA_BOX 2nd half motif for nucleotide binding, associated with P-loop. pos. 57-255 PF00005 | ABC_TRAN ABC transporter (PDOC00185) pos. 156-210 GC0425 | ATP_BIND_TRANSPORT ATP-binding proteins `active transport' family s pos. 64-71 PS00017 | ATP_GTP_A ATP/GTP-binding site motif A (P-loop) pos. 179-193 PS00211 | ABC_TRANSPORTER ABC transporters family signature. (367 aa)    
Predicted Functional Partners:
MYPU_2830
OLIGOPEPTIDE ABC TRANSPORTER PERMEASE PROTEIN; Identified by sequence similarity; possible; similar to SWISS-PROT:P47323 (OPPB_MYCGE) Blastp2 P=3e-39 C=50% Pfscan: pos. 210-281 PF00528 | BPD_TRANSP Binding-protein-dependent transport systems inner membrane component.
 0.999
MYPU_2840
OLIGOPEPTIDE ABC TRANSPORTER PERMEASE PROTEIN; Identified by sequence similarity; possible; similar to SWISS-PROT:P47324 (OPPC_MYCGE) Blastp2 P=9e-32 C=42%.
 
 0.999
MYPU_4110
OLIGOPEPTIDE ABC TRANSPORTER SYSTEM PERMEASE PROTEIN OPPC; Identified by sequence similarity; putative; similar to SWISS-PROT:P18794 (AMID_STRPN) Blastp2 P=7e-31 C=38%.
 
 0.999
MYPU_2860
OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN; Identified by sequence similarity; possible; similar to SWISS-PROT:P47326 (OPPF_MYCGE) Blastp2 P=1e-79 C=51% Pfscan: pos. 40-63 PS50101 | ATP_GTP_A2 P-loop nucleotide binding motif (does not find all). pos. 624-696 PS50100 | DA_BOX 2nd half motif for nucleotide binding, associated with P-loop. pos. 38-700 PF00005 | ABC_TRAN ABC transporter (PDOC00185) pos. 602-655 GC0425 | ATP_BIND_TRANSPORT ATP-binding proteins `active transport' family s pos. 45-52 PS00017 | ATP_GTP_A ATP/GTP-binding site motif A (P-loop) pos. 624-638 PS00211 | ABC_TR [...]
 
 
0.993
MYPU_4100
OLIGOPEPTIDE ABC TRANSPORTER SYSTEM PERMEASE PROTEIN OPPB; Identified by sequence similarity; putative; similar to SWISS-PROT:P24138 (OPPB_BACSU) Blastp2 P=3e-30 C=39%.
 0.992
MYPU_4130
OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN OPPF; Identified by sequence similarity; possible; similar to SWISS-PROT:P18766 (AMIF_STRPN) Blastp2 P=5e-44 C=42% Pfscan: pos. 78-100 PS50101 | ATP_GTP_A2 P-loop nucleotide binding motif (does not find all). pos. 283-355 PS50100 | DA_BOX 2nd half motif for nucleotide binding, associated with P-loop. pos. 76-359 PF00005 | ABC_TRAN ABC transporter (PDOC00185) pos. 262-314 GC0425 | ATP_BIND_TRANSPORT ATP-binding proteins `active transport' family s pos. 83-90 PS00017 | ATP_GTP_A ATP/GTP-binding site motif A (P-loop) pos. 283-297 PS00211 | [...]
 
 
0.961
MYPU_4150
LIPOPROTEIN; Identified by sequence similarity; similar to TREMBL:Q52268 Blast2p P=3e-8 C=10% Pfscan: pos. 13-23 PS00013 | PROKAR_LIPOPROTEIN Prokaryotic membrane lipoprotein lipid attachment site.
  
 
 0.950
MYPU_4120
OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN OPPD; Identified by sequence similarity; possible; similar to SWISS-PROT:P24136 (OPPD_BACSU) Blastp2 P=1e-77 C=44% Pfscan: pos. 292-364 PS50100 | DA_BOX 2nd half motif for nucleotide binding, associated with P-loop. pos. 168-368 PF00005 | ABC_TRAN ABC transporter (PDOC00185) pos. 273-323 GC0425 | ATP_BIND_TRANSPORT ATP-binding proteins `active transport' family s pos. 175-182 PS00017 | ATP_GTP_A ATP/GTP-binding site motif A (P-loop) pos. 292-306 PS00211 | ABC_TRANSPORTER ABC transporters family signature.
  
  
 
0.912
MYPU_3870
ABC TRANSPORTER ATP-BINDING PROTEIN; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.906
MYPU_4250
SPERMIDINE/PUTRESCINE ABC TRANSPORTER ATP-BINDING PROTEIN POTA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.900
Your Current Organism:
Mycoplasma pulmonis
NCBI taxonomy Id: 272635
Other names: M. pulmonis UAB CTIP, Mycoplasma pulmonis UAB CTIP, Mycoplasma pulmonis str. UAB CTIP, Mycoplasma pulmonis strain UAB CTIP
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