STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYPU_5550Unknown; No similarity found Pfscan: pos. 29-84 GC0265 | CARBOXYLESTERASE_B Carboxylesterases type-B active site. (112 aa)    
Predicted Functional Partners:
MYPU_5540
Unknown; No similarity found.
       0.773
MYPU_5560
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
       0.773
MYPU_5570
ALANYL-TRNA SYNTHETASE (ALANINE--TRNA LIGASE) (ALARS); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.773
MYPU_5580
TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.658
MYPU_5530
TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR GREA); Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.586
MYPU_5520
DEOXYGUANOSINE KINASE (DGUO KINASE) (DGK) (DEOXYNUCLEOSIDE KINASE COMPLEX I F-COMPONENT); Identified by sequence similarity; possible; similar to SWISS-PROT:P75396 (Y268_MYCPN) Blastp2 P=9e-21 C=50% Pfscan: pos. 7-14 PS00017 | ATP_GTP_A ATP/GTP-binding site motif A (P-loop).
       0.578
MYPU_5590
Unknown; No similarity found.
       0.507
MYPU_5510
HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (HGPRT) (HGPRTASE); Identified by sequence similarity; possible; similar to SWISS-PROT:P37472 (HPRT_BACSU) Blastp2 P=2e-38 C=61%; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.442
Your Current Organism:
Mycoplasma pulmonis
NCBI taxonomy Id: 272635
Other names: M. pulmonis UAB CTIP, Mycoplasma pulmonis UAB CTIP, Mycoplasma pulmonis str. UAB CTIP, Mycoplasma pulmonis strain UAB CTIP
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