STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HslUATP-dependent protease ATP-binding subunit HslU; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
HslV
HslU--HslV peptidase proteolytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OOF34502.1
ATP-dependent Clp protease ATP-binding subunit ClpX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.883
OOF32952.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.840
OOF32950.1
Nucleotide exchange factor GrpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.828
OOF33662.1
Molecular chaperone GroEL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.815
groES
10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.756
OOF35465.1
Molecular chaperone HtpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.749
Lon
Endopeptidase La; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.721
OOF35135.1
Co-chaperone YbbN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.714
ClpP
ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.676
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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