STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF34768.1ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)    
Predicted Functional Partners:
RpsA
30S ribosomal protein S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
RpsD
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.901
RpsK
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.879
OOF35519.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.863
RpsE
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.858
FusA
Translation elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.850
OOF33390.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.828
OOF32888.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.811
OOF34769.1
Penicillin-binding protein 1B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
RpsM
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.785
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.