STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF34330.1Catalase/peroxidase HPI; Derived by automated computational analysis using gene prediction method: Protein Homology. (727 aa)    
Predicted Functional Partners:
OOF34453.1
Superoxide dismutase; SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.766
DcuC
Anaerobic C4-dicarboxylate transporter DcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
OOF34329.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
OOF33364.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.427
OOF35348.1
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.419
OOF33931.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.414
OOF33471.1
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.410
OOF33312.1
Peptide-methionine (R)-S-oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.407
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.