STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF34192.1LOG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)    
Predicted Functional Partners:
OOF34195.1
preQ(1) synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.667
LeuC
3-isopropylmalate dehydratase small subunit; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.658
OOF34191.1
Flap endonuclease Xni; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.607
OOF33916.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.586
OOF34690.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
OOF34425.1
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.570
OOF34193.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.562
OOF33769.1
Lysogenization protein HflD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
OOF35422.1
YcgL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
sdhB
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.493
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.