STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF33871.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)    
Predicted Functional Partners:
SecY
Preprotein translocase subunit SecY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.930
OOF34292.1
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.899
SecE
Preprotein translocase subunit SecE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.871
OOF35312.1
Preprotein translocase subunit SecB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.779
OOF33471.1
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
OOF34054.1
Maltoporin; Porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.690
YidC
Membrane protein insertase YidC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
AcpP
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.567
OOF33954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.550
RplY
50S ribosomal protein L25; The Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.543
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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