STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpsD30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
InfA
Translation initiation factor IF-1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RpsL
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RpsG
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RpsF
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
RpsO
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RpsB
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RplM
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
RplJ
50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
RpsA
30S ribosomal protein S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.