STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NadAQuinolinate synthase; 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
OOF34398.1
L-aspartate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
OOF34836.1
Nicotinate-nucleotide diphosphorylase; Catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
OOF34974.1
Nicotinate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.766
OOF32691.1
biotin--[acetyl-CoA-carboxylase] ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.625
SdhA
Succinate dehydrogenase flavoprotein subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.623
OOF34597.1
Fumarate reductase (quinol) flavoprotein subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.621
CysE
Serine O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.604
PurL
Phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.578
OOF35272.1
Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
OOF34829.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.553
Your Current Organism:
Salinivibrio costicola
NCBI taxonomy Id: 272773
Other names: ATCC BAA-952, DSM 16359, S. costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. alcaliphilus Romano et al. 2005, Salinivibrio sp. 18AG, Salinivibrio sp. CBH448, strain 18AG
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