Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PM0231 | dcuC | PM0231 | PM0230 | Unknown. | DcuC. | 0.651 |
PM0231 | queA | PM0231 | PM0232 | Unknown. | QueA; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.801 |
PM1500 | dcuC | PM1500 | PM0230 | Unknown; Belongs to the UPF0304 family. | DcuC. | 0.583 |
PM1500 | frdC | PM1500 | PM0199 | Unknown; Belongs to the UPF0304 family. | FrdC; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. | 0.605 |
PM1500 | menC | PM1500 | PM1094 | Unknown; Belongs to the UPF0304 family. | MenC; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.706 |
PM1500 | tex | PM1500 | PM1447 | Unknown; Belongs to the UPF0304 family. | Tex; Belongs to the UPF0267 family. | 0.699 |
PM1894 | PM1895 | PM1894 | PM1895 | Unknown. | Unknown. | 0.991 |
PM1894 | dcuC | PM1894 | PM0230 | Unknown. | DcuC. | 0.597 |
PM1894 | menC | PM1894 | PM1094 | Unknown. | MenC; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.409 |
PM1894 | tex | PM1894 | PM1447 | Unknown. | Tex; Belongs to the UPF0267 family. | 0.607 |
PM1895 | PM1894 | PM1895 | PM1894 | Unknown. | Unknown. | 0.991 |
PM1895 | dcuC | PM1895 | PM0230 | Unknown. | DcuC. | 0.622 |
PM1895 | menC | PM1895 | PM1094 | Unknown. | MenC; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.411 |
PM1895 | tex | PM1895 | PM1447 | Unknown. | Tex; Belongs to the UPF0267 family. | 0.589 |
dcuB | dcuC | PM1434 | PM0230 | DcuB; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. | DcuC. | 0.767 |
dcuC | PM0231 | PM0230 | PM0231 | DcuC. | Unknown. | 0.651 |
dcuC | PM1500 | PM0230 | PM1500 | DcuC. | Unknown; Belongs to the UPF0304 family. | 0.583 |
dcuC | PM1894 | PM0230 | PM1894 | DcuC. | Unknown. | 0.597 |
dcuC | PM1895 | PM0230 | PM1895 | DcuC. | Unknown. | 0.622 |
dcuC | dcuB | PM0230 | PM1434 | DcuC. | DcuB; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. | 0.767 |
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