Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PM0627 | PM0903 | PM0627 | PM0903 | Unknown. | Unknown. | 0.777 |
PM0902 | PM0903 | PM0902 | PM0903 | Unknown. | Unknown. | 0.881 |
PM0902 | hflX | PM0902 | PM0907 | Unknown. | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.554 |
PM0902 | mutL | PM0902 | PM0904 | Unknown. | MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.793 |
PM0902 | trpX | PM0902 | PM0905 | Unknown. | TrpX; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.856 |
PM0903 | PM0627 | PM0903 | PM0627 | Unknown. | Unknown. | 0.777 |
PM0903 | PM0902 | PM0903 | PM0902 | Unknown. | Unknown. | 0.881 |
PM0903 | PM1136 | PM0903 | PM1136 | Unknown. | Unknown. | 0.656 |
PM0903 | PM1507 | PM0903 | PM1507 | Unknown. | Unknown. | 0.661 |
PM0903 | PM1614 | PM0903 | PM1614 | Unknown. | Unknown. | 0.703 |
PM0903 | hflX | PM0903 | PM0907 | Unknown. | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.695 |
PM0903 | mutL | PM0903 | PM0904 | Unknown. | MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.887 |
PM0903 | nagZ | PM0903 | PM0071 | Unknown. | Unknown; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. | 0.715 |
PM0903 | pfhB1 | PM0903 | PM0057 | Unknown. | PfhB1. | 0.657 |
PM0903 | trpX | PM0903 | PM0905 | Unknown. | TrpX; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.886 |
PM1136 | PM0903 | PM1136 | PM0903 | Unknown. | Unknown. | 0.656 |
PM1507 | PM0903 | PM1507 | PM0903 | Unknown. | Unknown. | 0.661 |
PM1614 | PM0903 | PM1614 | PM0903 | Unknown. | Unknown. | 0.703 |
hflX | PM0902 | PM0907 | PM0902 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unknown. | 0.554 |
hflX | PM0903 | PM0907 | PM0903 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unknown. | 0.695 |
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