Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PM1487 | atpB | PM1487 | PM1488 | Unknown. | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.931 |
| PM1487 | gidA | PM1487 | PM1485 | Unknown. | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.546 |
| PM1487 | gidB | PM1487 | PM1486 | Unknown. | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.551 |
| PM1868 | gidB | PM1868 | PM1486 | Unknown; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.589 |
| PM1868 | prmA | PM1868 | PM1088 | Unknown; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | PrmA; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.714 |
| PM1868 | relA | PM1868 | PM1865 | Unknown; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.518 |
| atpB | PM1487 | PM1488 | PM1487 | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Unknown. | 0.931 |
| atpB | gidA | PM1488 | PM1485 | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.599 |
| atpB | gidB | PM1488 | PM1486 | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.524 |
| atpB | yidC | PM1488 | PM1165 | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.454 |
| era | gidB | PM0060 | PM1486 | Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.557 |
| era | relA | PM0060 | PM1865 | Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.463 |
| era | rpS6 | PM0060 | PM1180 | Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | RpS6; Binds together with S18 to 16S ribosomal RNA. | 0.929 |
| era | thdF | PM0060 | PM1166 | Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.572 |
| gidA | PM1487 | PM1485 | PM1487 | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Unknown. | 0.546 |
| gidA | atpB | PM1485 | PM1488 | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.599 |
| gidA | gidB | PM1485 | PM1486 | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.972 |
| gidA | thdF | PM1485 | PM1166 | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.976 |
| gidA | yidC | PM1485 | PM1165 | GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.518 |
| gidB | PM1487 | PM1486 | PM1487 | GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Unknown. | 0.551 |
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