Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PM1999 | PM2000 | PM1999 | PM2000 | Unknown. | Unknown. | 0.771 |
PM1999 | PM2001 | PM1999 | PM2001 | Unknown. | Unknown. | 0.721 |
PM1999 | PM2002 | PM1999 | PM2002 | Unknown. | Unknown; Belongs to the CDS family. | 0.721 |
PM1999 | PM2005 | PM1999 | PM2005 | Unknown. | Unknown. | 0.532 |
PM1999 | fabZ | PM1999 | PM1995 | Unknown. | FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.464 |
PM1999 | glnB | PM1999 | PM2004 | Unknown. | GlnB; P-II indirectly controls the transcription of the glutamine synthetase gene (GlnA). P-II prevents NR-II-catalyzed conversion of NR- I to NR-I-phosphate, the transcriptional activator of GlnA. When P-II is uridylylated to P-II-UMP, these events are reversed. When the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP, which causes the deadenylation of glutamine synthetase by GlnE, so activating the enzyme (By similarity). | 0.528 |
PM1999 | lpxA | PM1999 | PM1996 | Unknown. | LpxA; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.493 |
PM1999 | lpxB | PM1999 | PM1997 | Unknown. | LpxB; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.671 |
PM1999 | mog | PM1999 | PM2003 | Unknown. | Mog. | 0.644 |
PM1999 | rnhB | PM1999 | PM1998 | Unknown. | RnhB; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.671 |
PM2000 | PM1999 | PM2000 | PM1999 | Unknown. | Unknown. | 0.771 |
PM2000 | PM2001 | PM2000 | PM2001 | Unknown. | Unknown. | 0.955 |
PM2000 | PM2002 | PM2000 | PM2002 | Unknown. | Unknown; Belongs to the CDS family. | 0.997 |
PM2000 | PM2005 | PM2000 | PM2005 | Unknown. | Unknown. | 0.576 |
PM2000 | fabZ | PM2000 | PM1995 | Unknown. | FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.469 |
PM2000 | glnB | PM2000 | PM2004 | Unknown. | GlnB; P-II indirectly controls the transcription of the glutamine synthetase gene (GlnA). P-II prevents NR-II-catalyzed conversion of NR- I to NR-I-phosphate, the transcriptional activator of GlnA. When P-II is uridylylated to P-II-UMP, these events are reversed. When the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP, which causes the deadenylation of glutamine synthetase by GlnE, so activating the enzyme (By similarity). | 0.554 |
PM2000 | lpxA | PM2000 | PM1996 | Unknown. | LpxA; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.505 |
PM2000 | lpxB | PM2000 | PM1997 | Unknown. | LpxB; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.655 |
PM2000 | mog | PM2000 | PM2003 | Unknown. | Mog. | 0.675 |
PM2000 | rnhB | PM2000 | PM1998 | Unknown. | RnhB; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.644 |
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