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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB0004Hypothetical protein. (233 aa)    
Predicted Functional Partners:
dtdA
Hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo. Catalyzes the hydrolysis of D- tyrosyl-tRNA(Tyr) and D-aspartyl-tRNA(Asp).
 
     0.644
nusA-2
Hypothetical protein, containing KH nucleic acid binding domain.
  
     0.572
PAB2350
Hypothetical protein.
       0.558
PAB0321
Predicted Fe-S-cluster oxidoreductase.
  
     0.542
PAB7359
Hypothetical protein, asnC family transcription regulator related.
  
     0.522
PAB0654
Hypothetical protein, DUF54 family; Belongs to the UPF0201 family.
  
     0.521
PAB0713
Pyruvate formate-lyase activating enzyme related protein.
 
     0.501
PAB1721
Hypothetical protein; Belongs to the UPF0282 family.
  
     0.483
PAB0623
Hypothetical protein.
  
     0.467
nusA
nusA transcription termination-antitermination factor nusA, putative; Participates in transcription termination. Belongs to the NusA family.
  
     0.451
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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