STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyAamyA alpha-amylase (or 4-alpha-glucanotransferase). (655 aa)    
Predicted Functional Partners:
agpa
Alpha-glucan phosphorylase.
 
 
 0.957
PAB2292
glgA glycogen synthase.
 
 
 0.954
PAB1857
Hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
 
  
 0.952
pmm
PMM phosphomannomutase.
    
 0.910
PAB0771
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPgp) (alpha-D-glucosyl-1-phosphate uridylyltransferase) (uridine diphosphoglucose pyrophosphorylase).
    
  0.900
apu
Apu amylopullulanase.
 
   
 0.701
malE
malE maltose-binding periplasmic protein precursor (maltodextrin-binding protein); Involved in an abc transport system for maltotriose.
     
 0.591
PAB2241
RNAsep RNA.
       0.572
malG
malG maltose transport system permease protein.
       0.531
malC
malF maltodextrin transport system permease protein.
     
 0.502
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.