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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB0174Phosphoesterase, putative. (488 aa)    
Predicted Functional Partners:
folp
Pterin binding enzyme, possibly dihydropteroate synthase.
       0.788
dacZ
Hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation.
   
 0.630
PAB2186
Hypothetical protein.
       0.590
PAB1804
Hypothetical protein; Belongs to the UPF0212 family.
  
     0.579
PAB1517
Tfx DNA binding protein; Putative transcriptional regulator.
  
     0.520
infB
infB intein containing translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 (By similarity).
  
  
 0.507
PAB1699
Hypothetical protein, containing metalloenzyme DUF136 domain.
  
     0.454
PAB0176
Protein involved in ribosomal biogenesis.
       0.453
PAB1046
Uncharacterized ArCR.
 
     0.444
PAB0732
rpoF DNA-directed RNA polymerase, subunit F.
  
     0.414
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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