Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dinF-likeBacterial multidrug resistance related protein. (463 aa)    
Predicted Functional Partners:
rpl37E
rpl37E LSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
   
 
 0.751
snrnp
Heptameric Sm/Lsm protein; Belongs to the snRNP Sm proteins family.
       0.717
tbp
TATA box binding protein TFIIB-BBRE complex, chain A; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).
   
    0.601
glyS
glyS glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly).
       0.589
gap
Gap glyceraldehyde 3-phosphate dehydrogenase.
  
  
 0.576
PAB0434
natA-like ABC-type transport protein, ATPase component.
  
  
 0.545
PAB1696
ABC transporter, ATP-binding protein, unknown substrate.
  
  
 0.545
PAB1703
ABC-type multidrug transporter, ATPase component, substrate unknown.
  
  
 0.545
PAB1845
ABC-type multidrug transport system, ATPase component.
  
  
 0.545
drrA-1
ABC-type multidrug transporter, ATPase component, substrate unknown.
  
  
 0.545
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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