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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB0245Short chain dehydrogenase of unknown substrate. (259 aa)    
Predicted Functional Partners:
PAB0246
Hypothetical protein.
       0.788
PAB0793
Sulfatase.
  
 
 0.695
PAB0328
Short chain dehydrogenase, substrate unknown; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.679
PAB1591
Hypothetical protein.
   
 
 0.643
PAB1592
Hypothetical protein.
   
 
 0.643
PAB2104
Hypothetical protein, containing helix-turn-helix motif.
 
     0.621
rad32
Rad32/mre11 DNA repair protein (EC 3.1.-.-); Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family.
  
 
 0.591
nuoD
nuoD NADH dehydrognease I, subunit D; Belongs to the complex I 49 kDa subunit family.
  
 
 0.528
nuoB
nuoB NADH dehydrogenase I, subunit B; Belongs to the complex I 20 kDa subunit family.
  
 
 0.519
nuoC
nuoC NADH dehydrogenase I, subunit C, putative.
   
 
 0.518
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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