Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB0649Hypothetical protein. (103 aa)    
Predicted Functional Partners:
cmo
Cmo tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein.
       0.786
moaD-like
moaD-like molybdopterin converting factor related, subunit 1.
       0.786
PAB1493
Hypothetical protein.
       0.717
PAB1530
alkA 3-methyladenine DNA glycosylase.
       0.717
PAB1932
nfeD nodulation protein homolog, probable membrane protein.
       0.717
PAB1933
Stomatin-like protein; Belongs to the band 7/mec-2 family.
       0.717
PAB0172
Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase.
       0.680
aor-2
Aor-2 tungsten-containing aldehyde ferredoxin oxidoreductase; Belongs to the AOR/FOR family.
       0.661
minD-1
minD-1 ATPase involved in chromosome partitioning, minD/MRP superfamily.
       0.599
PAB1812
Hypothetical protein, UPF0044 family.
       0.521
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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