Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB0686Hypothetical protein. (112 aa)    
Predicted Functional Partners:
PAB0685
Hypothetical protein.
       0.933
PAB1692
Hypothetical protein.
       0.568
rps13P
rps13P SSU ribosomal protein S13P/S18E; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
  
    0.527
PAB0955
ATP(GTP)binding protein; Small GTPase that may be involved in genome maintenance. Has weak intrinsic GTPase activity but displays no ATPase activity. Belongs to the GPN-loop GTPase family.
    
 0.510
PAB1065
Hypothetical protein, possibly GTP-binding.
    
 0.510
PAB1691
Hypothetical protein.
       0.506
PAB1685
Hypothetical protein.
       0.495
PAB1686
Hypothetical protein.
       0.495
PAB1687
Hypothetical protein.
       0.495
PAB1688
Hypothetical protein.
       0.495
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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