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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBrfbB dTDP-glucose 4,6-dehydratase. (333 aa)    
Predicted Functional Partners:
graD-3
Nucleotidyltransferase.
 
 
 0.999
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
 
 0.999
PAB0789
dTDP 4-dehydrorhamnose reductase (dTDP-L-rhamnose synthetase).
 
 
 0.996
ugd
GDP-mannose or UDP-glucose6-dehydrogenase.
 
  
 0.964
graD-1
Nucleotidyltransferase.
 
 
 0.962
graD-2
Nucleotidyltransferase.
  
 
 0.956
aspB-like1
Pleiotropic regulatory protein degT; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.929
PAB0783
Polysaccharide biosynthesis related protein, substrate unknown.
  
  
 0.888
PAB0795
Glycosyltransferase family protein, substrate unknown.
 
  
 0.793
wlbD
wlbD UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.770
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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