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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (185 aa)    
Predicted Functional Partners:
rfbB
rfbB dTDP-glucose 4,6-dehydratase.
 
 
 0.999
PAB0789
dTDP 4-dehydrorhamnose reductase (dTDP-L-rhamnose synthetase).
 
 0.999
graD-3
Nucleotidyltransferase.
 
  
 0.994
ugd
GDP-mannose or UDP-glucose6-dehydrogenase.
  
  
 0.987
PAB0795
Glycosyltransferase family protein, substrate unknown.
 
  
 0.831
hypoth
uppS probable undecaprenyl pyrophosphate synthetase (EC 2.5.1.31); Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
     
 0.819
PAB0783
Polysaccharide biosynthesis related protein, substrate unknown.
  
  
 0.814
PAB0766
Polysaccharide biosynthesis related protein, substrate unknown.
  
  
 0.762
PAB2422
Polysaccharide biosynthesis protein.
  
  
 0.762
PAB1409
Permease, putative, O-antigen transporter related.
  
  
 0.761
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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