Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PAB0245 | PAB0793 | PAB0245 | PAB0793 | Short chain dehydrogenase of unknown substrate. | Sulfatase. | 0.695 |
PAB0245 | PAB1591 | PAB0245 | PAB1591 | Short chain dehydrogenase of unknown substrate. | Hypothetical protein. | 0.643 |
PAB0245 | argF | PAB0245 | PAB1502 | Short chain dehydrogenase of unknown substrate. | argF ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.482 |
PAB0780 | PAB0793 | PAB0780 | PAB0793 | Protein involved in mitomycin biosynthesis. | Sulfatase. | 0.514 |
PAB0780 | PAB1591 | PAB0780 | PAB1591 | Protein involved in mitomycin biosynthesis. | Hypothetical protein. | 0.575 |
PAB0793 | PAB0245 | PAB0793 | PAB0245 | Sulfatase. | Short chain dehydrogenase of unknown substrate. | 0.695 |
PAB0793 | PAB0780 | PAB0793 | PAB0780 | Sulfatase. | Protein involved in mitomycin biosynthesis. | 0.514 |
PAB0793 | PAB1591 | PAB0793 | PAB1591 | Sulfatase. | Hypothetical protein. | 0.588 |
PAB0793 | PAB1917 | PAB0793 | PAB1917 | Sulfatase. | Hypothetical protein. | 0.573 |
PAB0793 | PAB2177 | PAB0793 | PAB2177 | Sulfatase. | Short-chain alcohol dehydrogenase, putative glucose-1-dehydrogenase. | 0.688 |
PAB0793 | argF | PAB0793 | PAB1502 | Sulfatase. | argF ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.594 |
PAB0793 | fabG | PAB0793 | PAB1085 | Sulfatase. | Short-chain alcohol dehydrogenase, putative glucose-1-dehydrogenase. | 0.693 |
PAB0793 | rpoD | PAB0793 | PAB2410 | Sulfatase. | rpoD DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.447 |
PAB0793 | rpoK | PAB0793 | PAB7132 | Sulfatase. | rpoK DNA-directed RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.518 |
PAB0793 | tbp | PAB0793 | PAB1726 | Sulfatase. | TATA box binding protein TFIIB-BBRE complex, chain A; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity). | 0.540 |
PAB1591 | PAB0245 | PAB1591 | PAB0245 | Hypothetical protein. | Short chain dehydrogenase of unknown substrate. | 0.643 |
PAB1591 | PAB0780 | PAB1591 | PAB0780 | Hypothetical protein. | Protein involved in mitomycin biosynthesis. | 0.575 |
PAB1591 | PAB0793 | PAB1591 | PAB0793 | Hypothetical protein. | Sulfatase. | 0.588 |
PAB1591 | PAB1917 | PAB1591 | PAB1917 | Hypothetical protein. | Hypothetical protein. | 0.573 |
PAB1591 | PAB2177 | PAB1591 | PAB2177 | Hypothetical protein. | Short-chain alcohol dehydrogenase, putative glucose-1-dehydrogenase. | 0.643 |
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