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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapAdapA dihydrodipicolinate synthase; Belongs to the DapA family. (294 aa)    
Predicted Functional Partners:
asd
Asd aspartate-semialdehyde dehydrogenase.
 
 
 0.985
hom
Hom homoserine dehydrogenase.
  
 
 0.958
rps17e
rps17E SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
    0.881
lysC
lysC like2 aspartate kinase related.
 
  
 0.849
rps15P
rps15P SSU ribosomal protein S15P.
  
    0.744
argD
argD acetylornithine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.
 
   
 0.741
hypoth
uppS probable undecaprenyl pyrophosphate synthetase (EC 2.5.1.31); Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
 
  
 0.694
ilvD
ilvD dihydroxy-acid dehydratase (EC 4.2.1.9); Belongs to the IlvD/Edd family.
  
  
 0.671
pyrH
pyrH uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.669
PAB0620
Hypothetical protein; Belongs to the PDCD5 family.
 
    0.655
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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