Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAB0953Hypothetical protein, containing cell wall binding repeat 2. (333 aa)    
Predicted Functional Partners:
PAB0339
Predicted Zn-dependent hydrolase of the beta-lactamase fold; Belongs to the UPF0173 family.
  
    0.725
iorB-1
iorB indolepyruvate ferredoxin oxidoreductase, subunit beta; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.649
PAB0854
acdA-3 acetate--coA ligase (ADP-forming) (EC 6.2.1.13), alpha chain.
       0.608
iorA-1
iorA indolepyruvate ferredoxin oxidoreductase, subunit alpha; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.593
PAB1586
Oligosaccharyl transferase, STT3 subunit.
  
     0.573
PAB1102
Hypothetical protein.
  
     0.550
PAB2202
Oligosaccharyl transferase, STT3 subunit.
  
     0.546
rps6e
rps6E SSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family.
       0.543
PAB2357
Component of the U3 small nucleolar ribonucleoprotein, imp4 homolog; Probably involved in the biogenesis of the ribosome.
  
     0.542
PAB2163
RPA41 subunit of the hetero-oligomeric complex involved in homologous recombination.
  
     0.521
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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