Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAB0976Putative transcriptional regulator. (200 aa)    
Predicted Functional Partners:
PAB1390
Oxidoreductase iron-sulfur protein.
     
 0.632
hypC
hypC hydrogenase expression/formation protein.
     
 0.617
PAB0975
Hypothetical protein.
       0.601
hypD
hypD hydrogenase expression/formation protein.
     
 0.596
PAB1393
Hydrogenase 4, component C or formate hydrogen lyase, subunit 4.
       0.583
PAB1395
Formate hydrogen lyase subunit 6 (hydrogenase 3 component F).
     
 0.564
mobA
mobA-like molybdopterin-guanine dinucleotide biosynthesis protein a related; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
       0.549
PAB1391
NADH ubiquinone oxidoreductase.
 
   
 0.535
PAB1511
Alcohol dehydrogenase.
 
   
 0.495
PAB3048
Putative ferredoxin.
  
   
 0.492
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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