Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB0984Hypothetical protein. (133 aa)    
Predicted Functional Partners:
PAB0983
Signal peptidase related protein, putative.
       0.859
PAB0985
Hypothetical protein.
       0.859
PAB0982
Hypothetical protein.
       0.727
PAB0981
Hypothetical protein.
       0.710
PAB0980
Hypothetical protein.
       0.412
ppa
Ppa thermostable inorganic pyrophosphatase (EC 3.6.1.1) (pyrophosphate phospho-hydrolase) (PPASE); Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.402
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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