STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eif-6Ribosome anti-association factor eIF6 homolog; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (227 aa)    
Predicted Functional Partners:
rplXA
rplXA LSU ribosomal protein LXA.
 
 
 0.998
rpl31E
rpl31E LSU ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family.
  
 
 0.996
rpl3
rpl3P LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 
 0.985
rpl7AE
rpl7AE LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 
 0.983
rpl30E
rpl30E LSU ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 
 0.979
rpl10e
rpl10E ribosomal protein L10; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.977
rpl24
rpl24P LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
 
 
 0.975
rpl15E
rpl15E LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
 
   0.972
rpl2
rpl2P LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
 
 0.972
rpL34E
rpl34E LSU ribosomal protein L34E; Belongs to the eukaryotic ribosomal protein eL34 family.
  
 
 0.970
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.