STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB1035Predicted hydrolase of the metallo-beta-lactamase superfamily. (516 aa)    
Predicted Functional Partners:
rnj
Metallo-beta-lactamase superfamily protein; A highly processive 5'-3' exoribonuclease; no evidence has been seen for endonuclease activity. Prefers 5'-phosphate or 5'- hydroxyl ends; 5'-triphosphate substrates are very poorly degraded, does not degrade circular RNA. Does not degrade pre-tRNA(Trp) suggesting it is inhibited by strong secondary structures. Also degrades ssNDA but not dsDNA.
     
0.927
PAB1868
Cleavage and polyadenylation specficity factor.
      
 0.699
rnz
Putative sulfatase, ATSA/ELAC family; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
      
 0.692
imp1
Imp1 hypothetical myo-inositol monophosphosphatase.
  
  
 0.664
PAB1037
Predicted glutamine amidotransferase.
     
 0.598
PAB1036
Hypothetical protein.
       0.588
PAB2389
idsA-like multifunctional short chain isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.579
gap
Gap glyceraldehyde 3-phosphate dehydrogenase.
     
 0.527
rpl37AE
rpl37AE LSU ribosomal protein L37AE; Binds to the 23S rRNA.
   
    0.503
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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