Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAB1107arsB arsenical pump membrane protein. (425 aa)    
Predicted Functional Partners:
PAB1108
Universal stress DNA-binding protein, UspA.
     
 0.944
speB
Agmatinase or arginase, arginase family protein; Belongs to the arginase family.
     
 0.605
PAB0498
Archaeal serine protease, putative; Belongs to the peptidase S16 family.
       0.582
eif5a
Translation initiation factor eIF5A (hypusine containing); Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
    0.577
PAB0325
Di-or tricarboxylate transporter.
 
   
0.449
PAB1555
Anion transporting atpase; arsA putative arsenical pump-driving ATPase (arsenite-translocating ATPase) (arsenical resistance ATPase).
     
 0.429
PAB1855
ABC transporter, ATPase subunit.
      
 0.416
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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