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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB1197appF-1 dipeptide transport system ATP-binding protein dppF or oligopeptide transport system ATP-binding protein appF or oppF. (335 aa)    
Predicted Functional Partners:
appC
dppC-1 dipeptide transport system permease protein dppC or oligopeptide transport system permease protein oppC.
 
 0.929
PAB1196
dppD-1 dipeptide transport system ATP-binding protein dppD or dppF or oligopeptide transport system ATP-binding protein oppD or oppF.
 
   
0.923
dppC-1
Binding protein-dependent transport system, inner membrane component.
 
 0.883
PAB1194
dppB-1 dipeptide transport system permease protein dppB or oligopeptide transport system permease protein oppB.
  
 0.839
PAB2148
ABC-type transport system, ATPase component, substrate unknown.
     
0.802
PAB1198
Hypothetical protein.
     
 0.794
pgiA
Glucose-6-phosphate isomerase.
       0.772
dppC
dppC-2 dipeptide ABC transporter, permease protein.
 
 0.751
appC-2
appC-2 oligopeptide transport integral membrane protein.
 
 0.744
PAB1345
dppC-3 ABC transporter, permease component.
 
 0.584
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.