Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PAB1333 | PAB1334 | PAB1333 | PAB1334 | cheC-2 chemotaxis protein cheC. | cheC-1 chemotaxis protein cheC. | 0.987 |
PAB1333 | PAB1337 | PAB1333 | PAB1337 | cheC-2 chemotaxis protein cheC. | Hypothetical protein. | 0.753 |
PAB1333 | PAB1338 | PAB1333 | PAB1338 | cheC-2 chemotaxis protein cheC. | Hypothetical protein. | 0.652 |
PAB1333 | cheA | PAB1333 | PAB1332 | cheC-2 chemotaxis protein cheC. | cheA chemotaxis histidine kinase. | 0.960 |
PAB1333 | cheB | PAB1333 | PAB1331 | cheC-2 chemotaxis protein cheC. | cheB protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.974 |
PAB1333 | cheD | PAB1333 | PAB1335 | cheC-2 chemotaxis protein cheC. | cheD chemotaxis protein cheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.999 |
PAB1333 | cheR | PAB1333 | PAB1329 | cheC-2 chemotaxis protein cheC. | cheR chemotaxis protein methyltransferase. | 0.922 |
PAB1333 | cheW | PAB1333 | PAB1027 | cheC-2 chemotaxis protein cheC. | cheW purine-binding chemotaxis protein. | 0.831 |
PAB1333 | cheY | PAB1333 | PAB1330 | cheC-2 chemotaxis protein cheC. | cheY chemotaxis response regulator. | 0.997 |
PAB1333 | tlpC | PAB1333 | PAB1336 | cheC-2 chemotaxis protein cheC. | Methyl accepting chemotaxis protein. | 0.937 |
PAB1334 | PAB1333 | PAB1334 | PAB1333 | cheC-1 chemotaxis protein cheC. | cheC-2 chemotaxis protein cheC. | 0.987 |
PAB1334 | PAB1337 | PAB1334 | PAB1337 | cheC-1 chemotaxis protein cheC. | Hypothetical protein. | 0.753 |
PAB1334 | PAB1338 | PAB1334 | PAB1338 | cheC-1 chemotaxis protein cheC. | Hypothetical protein. | 0.652 |
PAB1334 | cheA | PAB1334 | PAB1332 | cheC-1 chemotaxis protein cheC. | cheA chemotaxis histidine kinase. | 0.959 |
PAB1334 | cheB | PAB1334 | PAB1331 | cheC-1 chemotaxis protein cheC. | cheB protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.974 |
PAB1334 | cheD | PAB1334 | PAB1335 | cheC-1 chemotaxis protein cheC. | cheD chemotaxis protein cheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.999 |
PAB1334 | cheR | PAB1334 | PAB1329 | cheC-1 chemotaxis protein cheC. | cheR chemotaxis protein methyltransferase. | 0.923 |
PAB1334 | cheW | PAB1334 | PAB1027 | cheC-1 chemotaxis protein cheC. | cheW purine-binding chemotaxis protein. | 0.829 |
PAB1334 | cheY | PAB1334 | PAB1330 | cheC-1 chemotaxis protein cheC. | cheY chemotaxis response regulator. | 0.997 |
PAB1334 | tlpC | PAB1334 | PAB1336 | cheC-1 chemotaxis protein cheC. | Methyl accepting chemotaxis protein. | 0.937 |
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