Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PAB1389fdhA formate dehydrogenase, alpha subunit. (686 aa)    
Predicted Functional Partners:
PAB1390
Oxidoreductase iron-sulfur protein.
 
 0.998
fdhA-like
Formate dehydrogenase alpha subunit.
  
  
 
0.906
PAB1394
Hydrogenase 4, component G or formate hydrogen lyase, subunit 5.
    
 0.883
PAB1395
Formate hydrogen lyase subunit 6 (hydrogenase 3 component F).
 
  
 0.857
PAB1393
Hydrogenase 4, component C or formate hydrogen lyase, subunit 4.
       0.845
PAB1391
NADH ubiquinone oxidoreductase.
     
 0.818
PAB1392
Hydrogenase 4, component B or formate hydrogen lyase, subunit 3.
     
 0.806
PAB1396
Hydrogenase 4, component I or formate hydrogen lyase, subunit 7.
  
  
 0.763
PAB1931
noxA-2 NADH oxidase.
    
 0.713
noxA-1
noxA-1 NADH oxidase.
    
 0.647
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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