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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhr-1Lhr-1 large helicase-related protein. (912 aa)    
Predicted Functional Partners:
PAB0863
Multiple antibiotic resistance protein related, MarC family.
      
 0.772
PAB2220
Multiple antibiotic resistance (Mar)-related protein.
      
 0.772
PAB0562
Phosphoesterase, putative.
 
    0.694
lig
Lig DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
    0.593
PAB1818
Hypothetical protein.
       0.578
hjc
Hjc holliday-junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family.
       0.567
PAB0553
Hypothetical protein.
       0.567
PAB1819
Squalene-hopene cyclase, putative.
  
    0.485
cetZ
ftsZ-3 cell division GTPase, ftsZ homolog; Involved in cell shape control; Belongs to the CetZ family.
       0.460
PAB1821
Hypothetical protein.
       0.460
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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