Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB1900Conserved hypothetical protein (C-terminal part). (394 aa)    
Predicted Functional Partners:
PABs11404
Conserved hypothetical protein (N-terminal part).
      0.918
gatD
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate; Belongs to the asparaginase 1 family. GatD subfamily.
       0.625
gatE
Archaeal Glu-tRNAGln amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate; Belongs to the GatB/GatE family. GatE subfamily.
       0.625
PAB1903
Hypothetical protein.
       0.625
PAB1904
Hypothetical protein.
       0.625
scrk
scrK fructokinase (EC 2.7.1.4); Belongs to the carbohydrate kinase PfkB family.
       0.548
PAB2333
Bacterial type extracellular binding protein, substrate unknown.
 
     0.509
PAB1622
Hypothetical protein.
 
     0.505
PAB1618
ATPase of the AAA superfamily, putative.
  
     0.477
PAB1252
Fragment pyrolysin related.
  
     0.450
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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