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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB1900Conserved hypothetical protein (C-terminal part). (394 aa)    
Predicted Functional Partners:
PABs11404
Conserved hypothetical protein (N-terminal part).
      0.918
gatD
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate; Belongs to the asparaginase 1 family. GatD subfamily.
       0.627
gatE
Archaeal Glu-tRNAGln amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate; Belongs to the GatB/GatE family. GatE subfamily.
       0.627
PAB1903
Hypothetical protein.
       0.627
PAB1904
Hypothetical protein.
       0.627
PAB2333
Bacterial type extracellular binding protein, substrate unknown.
 
    0.564
scrk
scrK fructokinase (EC 2.7.1.4); Belongs to the carbohydrate kinase PfkB family.
       0.545
PAB1618
ATPase of the AAA superfamily, putative.
  
     0.477
PAB1252
Fragment pyrolysin related.
  
     0.450
PAB0993
Hypothetical protein.
  
     0.442
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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