Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PAB1920Membrane protein, rhomboid protein homolog. (212 aa)    
Predicted Functional Partners:
egsA
Glycerol 1-phosphate dehydrogenase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
  
    0.737
PAB0188
Predicted membrane protein.
       0.717
imp1
Imp1 hypothetical myo-inositol monophosphosphatase.
       0.717
PAB1908
Conserved hypothetical protein; Belongs to the UPF0179 family.
       0.711
upp
Upp uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.671
PAB1324
Stomatin-like protein.
 
 0.659
PAB1555
Anion transporting atpase; arsA putative arsenical pump-driving ATPase (arsenite-translocating ATPase) (arsenical resistance ATPase).
  
   0.647
PAB1933
Stomatin-like protein; Belongs to the band 7/mec-2 family.
  
 0.612
rpl7AE
rpl7AE LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
    0.593
rpl24E
rpl24E LSU ribosomal protein L24E; Binds to the 23S rRNA.
   
   0.476
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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