Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB1973Hypothetical protein. (122 aa)    
Predicted Functional Partners:
htpX-2
Heat shock protein/ Zn-dependent protease with chaperone function, M48 family.
     
 0.934
PAB1975
dCMP deaminase, putative.
       0.893
PAB1971
Glycosyltransferase.
       0.643
PAB1972
Hypothetical protein.
       0.643
PAB0206
Hypothetical protein.
  
     0.487
PAB0111
Predicted Fe-S oxidoreductase.
 
     0.475
prf1
Prf1 peptide chain release factor subunit 1 (translation termination factor ARF1); Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
       0.472
PAB0885
Permease, putative.
  
     0.429
PAB0953
Hypothetical protein, containing cell wall binding repeat 2.
 
     0.420
cS
Zinc-transporting ATPase (translocating P-type) (EC 3.6.3.5).
 
  
 0.407
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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