Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB1990Hypothetical protein. (448 aa)    
Predicted Functional Partners:
PAB1991
Alkylphosphonate uptake/carbon-phosphorus lyase, membrane bound subunit, phnP homolog.
       0.698
ino1
Ino1-like myo-inositol-1-phosphate synthase related.
       0.609
PAB1532
Hypothetical protein.
 
     0.588
PAB1992
Predicted ATPase of the PP-loop superfamily.
 
     0.550
PAB0993
Hypothetical protein.
  
     0.491
PAB1252
Fragment pyrolysin related.
  
     0.467
PAB0056
Glycosyl transferase, family 39.
 
     0.436
PAB2307
Dpm1 dolichol-phosphate mannosyltransferase.
 
     0.423
PAB0241
Probable protease, caaX family.
  
     0.411
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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